Hi everybody!
I’ve recently begun simulating things with Allpix-Squared and have run into a bizarre issue whenever I source the setup script:
[damir@lxplus916 ALLPIX2_Remote]$ source /cvmfs/clicdp.cern.ch/software/allpix-squared/3.0.0/x86_64-centos7-gcc12-opt/setup.sh
awk: symbol lookup error: /cvmfs/sft.cern.ch/lcg/views/LCG_103/x86_64-centos7-gcc12-opt/lib/libreadline.so.8: undefined symbol: UP
awk: symbol lookup error: /cvmfs/sft.cern.ch/lcg/views/LCG_103/x86_64-centos7-gcc12-opt/lib/libreadline.so.8: undefined symbol: UP
awk: symbol lookup error: /cvmfs/sft.cern.ch/lcg/views/LCG_103/x86_64-centos7-gcc12-opt/lib/libreadline.so.8: undefined symbol: UP
/cvmfs/sft.cern.ch/lcg/releases/R/4.1.2-dbb9a/x86_64-centos7-gcc12-opt/lib64/R/bin/exec/R: error while loading shared libraries: libreadline.so.6: cannot open shared object file: No such file or directory
/cvmfs/sft.cern.ch/lcg/releases/R/4.1.2-dbb9a/x86_64-centos7-gcc12-opt/lib64/R/bin/exec/R: error while loading shared libraries: libreadline.so.6: cannot open shared object file: No such file or directory
/cvmfs/sft.cern.ch/lcg/releases/R/4.1.2-dbb9a/x86_64-centos7-gcc12-opt/lib64/R/bin/exec/R: error while loading shared libraries: libreadline.so.6: cannot open shared object file: No such file or directory
/cvmfs/sft.cern.ch/lcg/releases/R/4.1.2-dbb9a/x86_64-centos7-gcc12-opt/lib64/R/bin/exec/R: error while loading shared libraries: libreadline.so.6: cannot open shared object file: No such file or directory
/cvmfs/sft.cern.ch/lcg/releases/R/4.1.2-dbb9a/x86_64-centos7-gcc12-opt/lib64/R/bin/exec/R: error while loading shared libraries: libreadline.so.6: cannot open shared object file: No such file or directory
gnuplot: error while loading shared libraries: libreadline.so.6: cannot open shared object file: No such file or directory
/eos/user/d/damir/ALLPIX2_Remote
/eos/user/d/damir/ALLPIX2_Remote
/eos/user/d/damir/ALLPIX2_Remote
[damir@lxplus916 ALLPIX2_Remote]$
I’m used to seeing the last few lines, but the output that comes before it seems to imply that I’m missing a library of some sort? Trying to run allpix itself doesn’t give more helpful output:
[damir@lxplus916 Simulation]$ allpix -c main_Irradiated.conf
allpix: error while loading shared libraries: libssl.so.10: cannot open shared object file: No such file or directory
This kills the program before it even starts.
The weirdest thing about this, however, is that after running the source command above, for some reason I also lose my ability to open emacs:
[damir@lxplus916 Simulation]$ emacs -nw main_Irradiated.conf
emacs: symbol lookup error: /lib64/libgtk-3.so.0: undefined symbol: pango_font_description_set_variations
Any ideas for what’s going on?
Cheers,
Damir
P.S: I’ll note that I’m still using v3.0.0, since I have some old simulations I want to compare new results to, and I don’t want to change versions since that’ll possibly mess with the comparison. That said, something really weird must’ve happened for an older version to stop working like this, right?